Vizitig: A visual tool for colored de Bruijn graphs exploration - Université Clermont Auvergne
Pré-Publication, Document De Travail Année : 2024

Vizitig: A visual tool for colored de Bruijn graphs exploration

Résumé

 Vizitig is a novel visualization tool designed for the exploration of colored de Bruijn graphs, a structure increasingly used for comparative genomics, pangenomics, and metagenomics. Unlike existing tools such as Bandage, Vizitig supports the simultaneous visualization of multiple genomes or samples by leveraging color-coding schemes to highlight shared and unique sequences or meta-data. Vizitig allows users to efficiently manage, navigate, and render graphs annotated with various metadata, such as genomic features or sample-specific information. Developed as a cross-platform Python application, Vizitig integrates a user-friendly web interface and a command-line-free environment, making it accessible to a broader audience of genomic researchers.
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Dates et versions

hal-04735326 , version 1 (14-10-2024)

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Bastien Degardins, Margaux Mouton, Bruno Guillon, Charles Paperman, Camille Marchet. Vizitig: A visual tool for colored de Bruijn graphs exploration. 2024. ⟨hal-04735326⟩
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