New particle formation (NPF) in the free troposphere (FT) is thought to be a significant source of particles over the oceans. The entrainment of particles initially formed in the marine FT is further suspected to be a major contributor to cloud condensation nuclei (CCN) number concentrations in the marine boundary layer (BL). Yet, little is known about the process and, more broadly, about the composition of the marine FT, which remains poorly explored due to access difficulties. Here we report measurements performed in April 2018 at the Maïdo Observatory with a nitrate-based chemical ionization atmospheric pressure interface time-of-flight mass spectrometer, which have allowed the first molecular-level characterization of the remote marine FT composition. A number of molecules and clusters were identified and classified into nine groups according to their chemical composition; among the identified species, the groups containing methanesulfonic acid (MSA) and C2 amines show signals that are on average significantly higher when the site is under conditions representative of the marine FT (compared to the BL). The correlation analysis revealed apparent connections between the signals of the identified compounds and several variables concurrently measured at the site (under FT conditions) or related to air mass history, suggesting that oxalic acid, malonic acid, and observed C2 amines could be of terrestrial origin, with, in addition, a possible marine source for oxalic acid and amines, while iodic acid, sulfur species, and maleic acid have a dominant marine origin. Identification of FT conditions at the site was based on the analysis of the standard deviation of the wind direction; this parameter, which can easily be derived from continuous measurements at the site, is shown in the first part of the study to be a relevant tracer when compared to predictions from the Meso-NH atmospheric model. Similar to other high-altitude sites, FT conditions are mainly encountered at night at Maïdo; therefore, the link to NPF could not be established, and further research is needed to assess the composition of precursors to nanoparticle formation in the marine FT.